STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC36938.116S rRNA (cytidine1402-2'-O)-methyltransferase. (285 aa)    
Predicted Functional Partners:
SMC36932.1
16S rRNA (cytosine1402-N4)-methyltransferase.
 
   
 0.907
SMC57736.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.815
SMC39733.1
tRNA1(Val) A37 N6-methylase TrmN6.
  
  
 0.615
SMC38473.1
16S rRNA (guanine527-N7)-methyltransferase.
 
   
 0.562
SMC76544.1
23S rRNA (pseudouridine1915-N3)-methyltransferase.
 
   
 0.558
SMC86360.1
methionyl-tRNA synthetase.
  
  
 0.553
SMC36922.1
valyl-tRNA synthetase.
       0.547
SMC41320.1
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family.
     
 0.541
SMC94270.1
23S rRNA (uracil1939-C5)-methyltransferase.
  
  
 0.535
SMC36920.1
LSU ribosomal protein L32P.
     
 0.522
Your Current Organism:
Clostridiales bacterium
NCBI taxonomy Id: 1898207
Other names: C. bacterium
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.