OCK61586.1 protein (Bradyrhizobium sp. LMTR3)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCK61586.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)

Predicted Functional Partners:

OCK61585.1

0.949

OCK61515.1

0.785

OCK54421.1

0.785

OCK53530.1

0.785

OCK61864.1

0.785

OCK55829.1

0.785

LMTR3_00785

0.775

OCK61584.1

0.773

OCK61505.1

0.759

OCK58333.1

0.751

Your Current Organism:

Bradyrhizobium sp. LMTR3

NCBI taxonomy Id: 189873
Other names: B. sp. LMTR 3, Bradyrhizobium sp. LMTR 3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMTR3_00785	OCK58333.1	LMTR3_00785	LMTR3_07775	Protease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.788
LMTR3_00785	OCK61586.1	LMTR3_00785	LMTR3_03405	Protease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
OCK53530.1	OCK58333.1	LMTR3_27825	LMTR3_07775	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
OCK53530.1	OCK61586.1	LMTR3_27825	LMTR3_03405	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
OCK54421.1	OCK58333.1	LMTR3_26450	LMTR3_07775	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.805
OCK54421.1	OCK61586.1	LMTR3_26450	LMTR3_03405	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
OCK55829.1	OCK58333.1	LMTR3_33500	LMTR3_07775	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.804
OCK55829.1	OCK61586.1	LMTR3_33500	LMTR3_03405	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
OCK58333.1	LMTR3_00785	LMTR3_07775	LMTR3_00785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Protease; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
OCK58333.1	OCK53530.1	LMTR3_07775	LMTR3_27825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
OCK58333.1	OCK54421.1	LMTR3_07775	LMTR3_26450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
OCK58333.1	OCK55829.1	LMTR3_07775	LMTR3_33500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
OCK58333.1	OCK61505.1	LMTR3_07775	LMTR3_25060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
OCK58333.1	OCK61515.1	LMTR3_07775	LMTR3_25125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
OCK58333.1	OCK61585.1	LMTR3_07775	LMTR3_03400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.809
OCK58333.1	OCK61586.1	LMTR3_07775	LMTR3_03405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
OCK58333.1	OCK61864.1	LMTR3_07775	LMTR3_31560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
OCK61505.1	OCK58333.1	LMTR3_25060	LMTR3_07775	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.749
OCK61505.1	OCK61586.1	LMTR3_25060	LMTR3_03405	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
OCK61515.1	OCK58333.1	LMTR3_25125	LMTR3_07775	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.805