STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCK59113.1Alpha-2-macroglobulin; Derived by automated computational analysis using gene prediction method: Protein Homology. (1737 aa)    
Predicted Functional Partners:
OCK55995.1
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.988
OCK59086.1
Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.963
OCK54041.1
SET domain-containing protein-lysine N-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.837
OCK59085.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.661
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.629
OCK59084.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.604
OCK59165.1
Steroid monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.537
OCK59083.1
Dolichol-phosphate mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
OCK59082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 0.409
Your Current Organism:
Bradyrhizobium sp. LMTR3
NCBI taxonomy Id: 189873
Other names: B. sp. LMTR 3, Bradyrhizobium sp. LMTR 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.