STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCK53756.1Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
OCK53755.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
 0.979
OCK57897.1
EmrB/QacA family drug resistance transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
 0.912
OCK59109.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.875
OCK61504.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.835
OCK59048.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.816
OCK62480.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.814
OCK61262.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.785
OCK54311.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.773
OCK59684.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
 0.748
OCK55093.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.726
Your Current Organism:
Bradyrhizobium sp. LMTR3
NCBI taxonomy Id: 189873
Other names: B. sp. LMTR 3, Bradyrhizobium sp. LMTR 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.