STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkms_0569Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; Amino acid transporter, transmembrane; KEGG: mmc:Mmcs_0557 amino acid permease-associated region; TC 2.A.3. (415 aa)    
Predicted Functional Partners:
Mkms_0568
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: mmc:Mmcs_0556 uracil-xanthine permease.
  
  
 0.794
Mkms_0570
KEGG: mmc:Mmcs_0558 hypothetical protein.
       0.779
Mkms_0728
PFAM: oxidoreductase, molybdopterin binding; KEGG: mmc:Mmcs_0714 oxidoreductase, molybdopterin binding protein.
  
  
 0.652
Mkms_0356
TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; KEGG: mmc:Mmcs_0346 trehalose synthase.
  
 0.611
Mkms_2815
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: mmc:Mmcs_2771 alpha amylase, catalytic region.
  
 0.611
Mkms_3684
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: mmc:Mmcs_3611 alpha amylase, catalytic region.
  
 0.611
glgE
Alpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB; Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.
  
 0.611
Mkms_4686
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: mmc:Mmcs_4598 alpha amylase, catalytic region.
  
 0.611
Mkms_5210
KEGG: mmc:Mmcs_5121 trehalose synthase-like protein; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
 0.611
Mkms_0571
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0559 transcriptional regulator, TetR family.
       0.548
Your Current Organism:
Mycobacterium sp. KMS
NCBI taxonomy Id: 189918
Other names: M. sp. KMS
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