STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkms_1834PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_1787 isochorismatase hydrolase. (207 aa)    
Predicted Functional Partners:
Mkms_1893
PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_1846 isochorismatase hydrolase.
  
  
  0.968
Mkms_2808
PFAM: Amidase; KEGG: mmc:Mmcs_2764 amidase.
 
  
  0.919
Mkms_1888
PFAM: Amidase; KEGG: mmc:Mmcs_1841 amidase.
 
  
  0.916
Mkms_1887
Biotin carboxylation domain protein; KEGG: mmc:Mmcs_1840 allophanate hydrolase; TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein.
    
  0.903
Mkms_1835
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_1788 Rieske (2Fe-2S) region.
 
     0.890
Mkms_1833
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_1786 AMP-dependent synthetase and ligase.
  
   0.828
Mkms_2809
PFAM: isochorismatase hydrolase; KEGG: mmc:Mmcs_2765 isochorismatase hydrolase.
  
     0.742
Mkms_1836
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: mmc:Mmcs_1789 NAD-dependent epimerase/dehydratase.
  
  
 0.700
Mkms_1838
KEGG: mmc:Mmcs_1791 hypothetical protein.
 
     0.698
Mkms_1837
KEGG: mmc:Mmcs_1790 hypothetical protein.
  
    0.618
Your Current Organism:
Mycobacterium sp. KMS
NCBI taxonomy Id: 189918
Other names: M. sp. KMS
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