node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mkms_2256 | Mkms_2257 | Mkms_2256 | Mkms_2257 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | KEGG: mmc:Mmcs_2211 hypothetical protein. | 0.959 |
Mkms_2256 | Mkms_3051 | Mkms_2256 | Mkms_3051 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | 0.967 |
Mkms_2256 | rph | Mkms_2256 | Mkms_3918 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.973 |
Mkms_2256 | rplD | Mkms_2256 | Mkms_1031 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.884 |
Mkms_2256 | rplR | Mkms_2256 | Mkms_1048 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.798 |
Mkms_2256 | rplW | Mkms_2256 | Mkms_1032 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.836 |
Mkms_2256 | rplX | Mkms_2256 | Mkms_1043 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.789 |
Mkms_2256 | rpsD | Mkms_2256 | Mkms_1129 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.934 |
Mkms_2256 | rpsE | Mkms_2256 | Mkms_1049 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.790 |
Mkms_2256 | rpsK | Mkms_2256 | Mkms_1128 | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.917 |
Mkms_2257 | Mkms_2256 | Mkms_2257 | Mkms_2256 | KEGG: mmc:Mmcs_2211 hypothetical protein. | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | 0.959 |
Mkms_3051 | Mkms_2256 | Mkms_3051 | Mkms_2256 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mmc:Mmcs_2210 3'-5' exonuclease. | 0.967 |
Mkms_3051 | rph | Mkms_3051 | Mkms_3918 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.839 |
Mkms_3051 | rplD | Mkms_3051 | Mkms_1031 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.991 |
Mkms_3051 | rplR | Mkms_3051 | Mkms_1048 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.928 |
Mkms_3051 | rplW | Mkms_3051 | Mkms_1032 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.967 |
Mkms_3051 | rplX | Mkms_3051 | Mkms_1043 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.972 |
Mkms_3051 | rpsD | Mkms_3051 | Mkms_1129 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.996 |
Mkms_3051 | rpsE | Mkms_3051 | Mkms_1049 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.988 |
Mkms_3051 | rpsK | Mkms_3051 | Mkms_1128 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: mmc:Mmcs_3005 RNA binding S1. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.995 |