STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkms_2304PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase. (295 aa)    
Predicted Functional Partners:
Mkms_2303
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_2256 agmatinase, putative; Belongs to the arginase family.
  
  
 0.792
Mkms_2301
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_2254 short-chain dehydrogenase/reductase SDR.
       0.753
Mkms_2302
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mmc:Mmcs_2255 short-chain dehydrogenase/reductase SDR.
       0.753
Mkms_2300
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_2253 amino acid permease-associated region; TC 2.A.3.
       0.746
Mkms_2305
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_2258 Rieske (2Fe-2S) region.
       0.746
Mkms_2306
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mmc:Mmcs_2259 ferredoxin.
       0.746
Mkms_1202
KEGG: mmc:Mmcs_1185 hypothetical protein.
     0.726
Mkms_2307
PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_2260 purine catabolism PurC-like protein.
       0.645
Mkms_2299
PFAM: Polyprenyl synthetase; KEGG: mmc:Mmcs_2252 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.557
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.414
Your Current Organism:
Mycobacterium sp. KMS
NCBI taxonomy Id: 189918
Other names: M. sp. KMS
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