STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkms_3851KEGG: mmc:Mmcs_3778 type I site-specific deoxyribonuclease. (104 aa)    
Predicted Functional Partners:
Mkms_3852
PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mmc:Mmcs_3779 type III restriction enzyme, res subunit.
     0.994
Mkms_3850
KEGG: mmc:Mmcs_3777 restriction endonuclease S subunits-like protein.
 
 
 0.969
Mkms_3845
PFAM: N-6 DNA methylase; KEGG: mmc:Mmcs_3772 N-6 DNA methylase.
 
 
 0.933
Mkms_3849
KEGG: mmc:Mmcs_3776 hypothetical protein.
 
     0.819
Mkms_0030
PFAM: N-6 DNA methylase; KEGG: mmc:Mmcs_0022 N-6 DNA methylase.
 
 
 0.788
Mkms_3848
KEGG: mmc:Mmcs_3775 hypothetical protein.
       0.659
Mkms_0031
KEGG: mmc:Mmcs_0023 type I restriction-modification system specificity subunit.
 
 
 0.647
Mkms_0846
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: mmc:Mmcs_0829 ATPase associated with various cellular activities, AAA_5.
  
  
 0.644
Mkms_4930
KEGG: mmc:Mmcs_4842 hypothetical protein.
 
  
 0.487
Mkms_3853
PFAM: NADPH-dependent FMN reductase; KEGG: mmc:Mmcs_3780 NADPH-dependent FMN reductase.
       0.443
Your Current Organism:
Mycobacterium sp. KMS
NCBI taxonomy Id: 189918
Other names: M. sp. KMS
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