STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkms_5013PFAM: nitroreductase; KEGG: mmc:Mmcs_4924 nitroreductase. (222 aa)    
Predicted Functional Partners:
Mkms_5014
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: mmc:Mmcs_4925 NmrA-like protein.
  
  
 0.783
Mkms_5012
PFAM: regulatory protein, LuxR; KEGG: mmc:Mmcs_4923 transcriptional regulator, LuxR family.
       0.601
Mkms_5015
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4927 short-chain dehydrogenase/reductase SDR.
  
   0.597
Mkms_2676
KEGG: mmc:Mmcs_2631 metal-dependent phosphohydrolase, HD subdomain protein.
 
     0.497
Mkms_5016
PFAM: beta-lactamase domain protein; KEGG: mmc:Mmcs_4928 beta-lactamase-like protein.
     
 0.472
Mkms_5011
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_4922 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.447
Mkms_3806
KEGG: mmc:Mmcs_3733 hypothetical protein.
 
    0.436
Mkms_1097
Erythromycin esterase; PFAM: phosphoribosyltransferase; Erythromycin esterase; KEGG: mmc:Mmcs_1081 erythromycin esterase.
  
  
 0.406
Mkms_2656
TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_2612 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD.
  
  
 0.406
Mkms_2477
TIGRFAM: ABC drug efflux pump, inner membrane subunit, DrrB family; PFAM: ABC-2 type transporter; KEGG: mmc:Mmcs_2432 ABC transporter, DrrB efflux protein.
  
  
 0.400
Your Current Organism:
Mycobacterium sp. KMS
NCBI taxonomy Id: 189918
Other names: M. sp. KMS
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