STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANW19398.1CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology. (1016 aa)    
Predicted Functional Partners:
ANW19401.1
Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
ANW19403.1
Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.990
ANW19399.1
Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
ANW19402.1
Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
ANW19400.1
Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
ANW19397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
ANW19396.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
ANW22006.1
CRISPR-associated helicase/endonuclease Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.528
ANW20160.1
Type I-B CRISPR-associated protein Cas7/Cst2/DevR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.512
ANW20159.1
CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.499
Your Current Organism:
Streptomyces clavuligerus
NCBI taxonomy Id: 1901
Other names: ATCC 27064, BCRC 11518, CBS 226.75, CCRC 11518, CCRC:11518, CECT 3125, DSM 40751, DSM 738, IFO 13307, IMET 43657, JCM 4710, KCTC 9095, NBRC 13307, NCIMB 12785, NCIMB 14335, NRRL 3585, S. clavuligerus, Streptomyces clavuligerus ATCC 27064, Streptomyces clavuligerus NRRL 3585, VKM Ac-602
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