STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCK54687.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)    
Predicted Functional Partners:
OCK62984.1
Nitrogen fixation protein FixA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.826
OCK62833.1
Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.810
OCK67438.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.779
OCK66746.1
pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
OCK67832.1
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
OCK65485.1
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.725
OCK64575.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.724
OCK60675.1
Fatty-acid oxidation protein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.724
OCK66256.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.724
gcvT
Glycine cleavage system protein T; Catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.711
Your Current Organism:
Bradyrhizobium paxllaeri
NCBI taxonomy Id: 190148
Other names: B. paxllaeri, Bradyrhizobium paxllaeri Duran et al. 2014, Bradyrhizobium sp. LMTR 12, Bradyrhizobium sp. LMTR 14, Bradyrhizobium sp. LMTR 17, Bradyrhizobium sp. LMTR 21, Bradyrhizobium sp. LMTR 25, Bradyrhizobium sp. LMTR 47, DSM 18454, HAMBI 2911, strain LMTR 21
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