STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCK67591.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)    
Predicted Functional Partners:
OCK66944.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.981
OCK67165.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.879
OCK57187.1
DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.808
OCK66024.1
Primosomal protein N; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.797
OCK60983.1
Replicative DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.795
OCK67590.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.794
OCK67592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
OCK55618.1
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.769
OCK65925.1
DNA polymerase III subunit gamma/tau; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.766
OCK61128.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.763
Your Current Organism:
Bradyrhizobium paxllaeri
NCBI taxonomy Id: 190148
Other names: B. paxllaeri, Bradyrhizobium paxllaeri Duran et al. 2014, Bradyrhizobium sp. LMTR 12, Bradyrhizobium sp. LMTR 14, Bradyrhizobium sp. LMTR 17, Bradyrhizobium sp. LMTR 21, Bradyrhizobium sp. LMTR 25, Bradyrhizobium sp. LMTR 47, DSM 18454, HAMBI 2911, strain LMTR 21
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