ehaD protein (Methanopyrus kandleri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ehaD

Uncharacterized membrane protein, conserved in archaea. (80 aa)

Predicted Functional Partners:

ehaF

0.959

ehaE

0.956

ehaB

0.953

ehaC

0.936

ehaH

0.911

ehaA

0.883

ehaG

0.871

ehbK

0.839

ehaL

0.837

ehaJ

0.828

Your Current Organism:

Methanopyrus kandleri

NCBI taxonomy Id: 190192
Other names: M. kandleri AV19, Methanopyrus kandleri AV19, Methanopyrus kandleri str. AV19

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ehaA	ehaB	MK0477	MK0476	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.886
ehaA	ehaC	MK0477	MK0475	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.878
ehaA	ehaD	MK0477	MK0474	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.883
ehaA	ehaE	MK0477	MK0473	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.870
ehaA	ehaF	MK0477	MK0472	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.870
ehaA	ehaG	MK0477	MK0471	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.866
ehaA	ehaH	MK0477	MK0470	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.947
ehaA	ehaJ	MK0477	MK0468	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Membrane protein related to formate hydrogenlyase subunit 4.	0.922
ehaA	ehaL	MK0477	MK0466	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Uncharacterized membrane protein, conserved in archaea.	0.820
ehaA	ehbK	MK0477	MK0461	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	Ferredoxin.	0.810
ehaB	ehaA	MK0476	MK0477	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea; One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers (By similarity).	0.886
ehaB	ehaC	MK0476	MK0475	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.907
ehaB	ehaD	MK0476	MK0474	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.953
ehaB	ehaE	MK0476	MK0473	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.959
ehaB	ehaF	MK0476	MK0472	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.958
ehaB	ehaG	MK0476	MK0471	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.870
ehaB	ehaH	MK0476	MK0470	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.871
ehaB	ehaJ	MK0476	MK0468	Uncharacterized membrane protein, conserved in archaea.	Membrane protein related to formate hydrogenlyase subunit 4.	0.861
ehaB	ehaL	MK0476	MK0466	Uncharacterized membrane protein, conserved in archaea.	Uncharacterized membrane protein, conserved in archaea.	0.836
ehaB	ehbK	MK0476	MK0461	Uncharacterized membrane protein, conserved in archaea.	Ferredoxin.	0.841