Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FN0379 | FN0380 | FN0379 | FN0380 | Hypothetical protein. | Unknown. | 0.777 |
FN0379 | FN2021 | FN0379 | FN2021 | Hypothetical protein. | ABC1 family protein; LSU ribosomal protein L7AE. | 0.785 |
FN0379 | rpsC | FN0379 | FN1639 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.781 |
FN0379 | rpsE | FN0379 | FN1627 | Hypothetical protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.775 |
FN0379 | rpsH | FN0379 | FN1630 | Hypothetical protein. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.773 |
FN0379 | rpsJ | FN0379 | FN1646 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.775 |
FN0379 | rpsL | FN0379 | FN1558 | Hypothetical protein. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.784 |
FN0379 | rpsN | FN0379 | FN1631 | Hypothetical protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.793 |
FN0379 | rpsQ | FN0379 | FN1636 | Hypothetical protein. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.784 |
FN0379 | rpsS | FN0379 | FN1641 | Hypothetical protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.793 |
FN0380 | FN0379 | FN0380 | FN0379 | Unknown. | Hypothetical protein. | 0.777 |
FN2021 | FN0379 | FN2021 | FN0379 | ABC1 family protein; LSU ribosomal protein L7AE. | Hypothetical protein. | 0.785 |
FN2021 | rpsC | FN2021 | FN1639 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
FN2021 | rpsE | FN2021 | FN1627 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
FN2021 | rpsH | FN2021 | FN1630 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
FN2021 | rpsJ | FN2021 | FN1646 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
FN2021 | rpsL | FN2021 | FN1558 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
FN2021 | rpsN | FN2021 | FN1631 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
FN2021 | rpsQ | FN2021 | FN1636 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
FN2021 | rpsS | FN2021 | FN1641 | ABC1 family protein; LSU ribosomal protein L7AE. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
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