Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FN0163 | FN1055 | FN0163 | FN1055 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Cysteine synthase. | 0.823 |
| FN0163 | FN1220 | FN0163 | FN1220 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Cysteine synthase. | 0.823 |
| FN0163 | FN1419 | FN0163 | FN1419 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Methionine gamma-lyase; Catalyzes the alpha,gamma-elimination of L-methionine to produce methanethiol, 2-oxobutanoate and ammonia, and that of L- homocysteine (By similarity). Can also use L-cysteine as substrate, catalyzing its alpha,beta-elimination; this activity seems to only minimally contribute to the production of hydrogen sulfide (H2S) by F.nucleatum in the oral cavity, which is toxic for a large variety of cells in periodontal regions. | 0.935 |
| FN0163 | FN1745 | FN0163 | FN1745 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Cystathionine gamma-synthase. | 0.935 |
| FN0163 | metG | FN0163 | FN1268 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.908 |
| FN0163 | metK | FN0163 | FN0355 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.933 |
| FN0163 | msrA-2 | FN0163 | FN0803 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Cytochrome C-TYPE biogenesis protein ccdA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.574 |
| FN1055 | FN0163 | FN1055 | FN0163 | Cysteine synthase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.823 |
| FN1055 | FN1220 | FN1055 | FN1220 | Cysteine synthase. | Cysteine synthase. | 0.917 |
| FN1055 | FN1419 | FN1055 | FN1419 | Cysteine synthase. | Methionine gamma-lyase; Catalyzes the alpha,gamma-elimination of L-methionine to produce methanethiol, 2-oxobutanoate and ammonia, and that of L- homocysteine (By similarity). Can also use L-cysteine as substrate, catalyzing its alpha,beta-elimination; this activity seems to only minimally contribute to the production of hydrogen sulfide (H2S) by F.nucleatum in the oral cavity, which is toxic for a large variety of cells in periodontal regions. | 0.912 |
| FN1055 | FN1745 | FN1055 | FN1745 | Cysteine synthase. | Cystathionine gamma-synthase. | 0.961 |
| FN1055 | metG | FN1055 | FN1268 | Cysteine synthase. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.406 |
| FN1055 | msrA-2 | FN1055 | FN0803 | Cysteine synthase. | Cytochrome C-TYPE biogenesis protein ccdA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.542 |
| FN1163 | FN1419 | FN1163 | FN1419 | Thioredoxin reductase. | Methionine gamma-lyase; Catalyzes the alpha,gamma-elimination of L-methionine to produce methanethiol, 2-oxobutanoate and ammonia, and that of L- homocysteine (By similarity). Can also use L-cysteine as substrate, catalyzing its alpha,beta-elimination; this activity seems to only minimally contribute to the production of hydrogen sulfide (H2S) by F.nucleatum in the oral cavity, which is toxic for a large variety of cells in periodontal regions. | 0.901 |
| FN1163 | FN1984 | FN1163 | FN1984 | Thioredoxin reductase. | Thioredoxin reductase; Glutaredoxin-like protein. | 0.930 |
| FN1163 | metG | FN1163 | FN1268 | Thioredoxin reductase. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.528 |
| FN1163 | msrA-2 | FN1163 | FN0803 | Thioredoxin reductase. | Cytochrome C-TYPE biogenesis protein ccdA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.734 |
| FN1220 | FN0163 | FN1220 | FN0163 | Cysteine synthase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.823 |
| FN1220 | FN1055 | FN1220 | FN1055 | Cysteine synthase. | Cysteine synthase. | 0.917 |
| FN1220 | FN1419 | FN1220 | FN1419 | Cysteine synthase. | Methionine gamma-lyase; Catalyzes the alpha,gamma-elimination of L-methionine to produce methanethiol, 2-oxobutanoate and ammonia, and that of L- homocysteine (By similarity). Can also use L-cysteine as substrate, catalyzing its alpha,beta-elimination; this activity seems to only minimally contribute to the production of hydrogen sulfide (H2S) by F.nucleatum in the oral cavity, which is toxic for a large variety of cells in periodontal regions. | 0.912 |
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