STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BI347_19730Peptidoglycan N-acetylmuramoylhydrolase. (629 aa)    
Predicted Functional Partners:
BI347_19735
NAD-dependent dehydratase.
       0.748
cca
2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
  
    0.734
BI347_19745
Uncharacterized protein.
       0.725
BI347_08815
Uncharacterized protein.
  
     0.650
BI347_07690
Ribonuclease II.
 
     0.626
BI347_05735
Uncharacterized protein.
  
     0.586
BI347_14085
Flagellar hook protein FlgE.
  
  
 0.580
BI347_18120
Flagellar hook protein FlgE.
  
  
 0.580
fliE
Flagellar hook-basal body complex protein FliE.
  
  
 0.579
fliE-2
Flagellar hook-basal body complex protein FliE.
  
  
 0.579
Your Current Organism:
Chromobacterium sphagni
NCBI taxonomy Id: 1903179
Other names: C. sphagni, Chromobacterium sp. 14B-1, Chromobacterium sp. 37-2, Chromobacterium sphagni Blackburn et al. 2017, JCM 31882, NRRL B-67130, strain IIBBL 14B-1
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