STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTN85_0978SAM-dependent methyltransferase; arCOG01792. (194 aa)    
Predicted Functional Partners:
BTN85_1475
NADH dehydrogenase subunit D; arCOG01548; gene: nuoD.
   
 0.999
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.722
rps24e
Ribosomal protein S24E; arCOG04182; gene: RPS24A; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.614
rps6e
Ribosomal protein S6E/S10; arCOG01946; gene: RPS6A; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.602
rps3ae
Ribosomal protein S3AE; arCOG04186; gene: RPS1A; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.601
rps4e
Ribosomal protein S4E; arCOG04093; gene: RPS4A; Belongs to the eukaryotic ribosomal protein eS4 family.
    
  0.592
rps15
Ribosomal protein S15P; arCOG04185; gene: rpsO.
    
  0.587
rps12
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
    
  0.586
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.585
rps8
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
  0.571
Your Current Organism:
Methanohalarchaeum thermophilum
NCBI taxonomy Id: 1903181
Other names: C. Methanohalarchaeum thermophilum, Candidatus Methanohalarchaeum thermophilum, Euryarchaeota archaeon HMET1, archaeon HMET1, strain HMET1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.