STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTN85_1557RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; arCOG01181; gene: RIO2. (291 aa)    
Predicted Functional Partners:
BTN85_0336
Endonuclease Nob1 consisting of PIN domain and Zn-ribbon module; arCOG00721; gene: nob1.
   
 0.999
rps19p
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
 0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
    
 0.999
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.999
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.999
rps11
Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.999
rps6e
Ribosomal protein S6E/S10; arCOG01946; gene: RPS6A; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
  0.999
BTN85_0469
rRNA processing protein Krr1/Pno1 containing KH domain; arCOG04150; gene: krr1.
   
 
 0.996
rps3ae
Ribosomal protein S3AE; arCOG04186; gene: RPS1A; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.992
rps15
Ribosomal protein S15P; arCOG04185; gene: rpsO.
  
 
 0.987
Your Current Organism:
Methanohalarchaeum thermophilum
NCBI taxonomy Id: 1903181
Other names: C. Methanohalarchaeum thermophilum, Candidatus Methanohalarchaeum thermophilum, Euryarchaeota archaeon HMET1, archaeon HMET1, strain HMET1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.