STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTN85_1850ABC-type transport system involved in cytochrome c biogenesis permease component; arCOG00267; gene: ccmC. (184 aa)    
Predicted Functional Partners:
BTN85_1851
ABC-type transport system involved in cytochrome c biogenesis permease component; arCOG01328; gene: ccmB.
 
 0.999
BTN85_1852
ABC-type multidrug transport system, ATPase component CcmA; arCOG00196; gene: ccmA.
 
  
  0.919
BTN85_1583
Cytochrome c biogenesis factor CcmF; arCOG00270; gene: ccmF.
 
  
 0.887
BTN85_1475
NADH dehydrogenase subunit D; arCOG01548; gene: nuoD.
   
  
 0.882
BTN85_1857
Uroporphyrinogen-III synthase HemD; arCOG02048; gene: hemD.
  
    0.749
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
  
 0.748
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.671
BTN85_1848
Cytochrome c-type biogenesis protein CcmE; arCOG04957; gene: ccmE.
     
 0.670
BTN85_1631
Uroporphyrinogen-III methylase; arCOG00644; gene: cysG.
  
 
  0.667
BTN85_1849
Hypothetical protein.
       0.639
Your Current Organism:
Methanohalarchaeum thermophilum
NCBI taxonomy Id: 1903181
Other names: C. Methanohalarchaeum thermophilum, Candidatus Methanohalarchaeum thermophilum, Euryarchaeota archaeon HMET1, archaeon HMET1, strain HMET1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.