STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APV49072.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
APV52296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
APV49375.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
APV50266.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
APV50550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
APV49370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.852
APV49377.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.852
APV49282.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
APV49073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.699
APV48564.1
LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.642
Your Current Organism:
Betaproteobacteria bacterium GR1643
NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.