APV49317.1 protein (Betaproteobacteria bacterium GR1643)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APV49317.1

Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)

Predicted Functional Partners:

APV49324.1

0.988

APV49325.1

0.988

APV49318.1

0.984

APV49322.1

0.984

APV49316.1

0.982

APV49320.1

0.979

APV52324.1

0.958

APV49326.1

0.943

APV49328.1

0.943

APV49330.1

0.925

Your Current Organism:

Betaproteobacteria bacterium GR1643

NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APV49316.1	APV49317.1	BWI17_06250	BWI17_06255	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APV49316.1	APV49318.1	BWI17_06250	BWI17_06260	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APV49316.1	APV49320.1	BWI17_06250	BWI17_06270	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.979
APV49316.1	APV49322.1	BWI17_06250	BWI17_06280	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
APV49316.1	APV49324.1	BWI17_06250	BWI17_06295	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APV49316.1	APV49325.1	BWI17_06250	BWI17_06300	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
APV49316.1	APV49326.1	BWI17_06250	BWI17_06305	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
APV49316.1	APV49328.1	BWI17_06250	BWI17_06315	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
APV49316.1	APV49330.1	BWI17_06250	BWI17_06325	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.913
APV49316.1	APV52324.1	BWI17_06250	BWI17_06285	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
APV49317.1	APV49316.1	BWI17_06255	BWI17_06250	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APV49317.1	APV49318.1	BWI17_06255	BWI17_06260	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APV49317.1	APV49320.1	BWI17_06255	BWI17_06270	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.979
APV49317.1	APV49322.1	BWI17_06255	BWI17_06280	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
APV49317.1	APV49324.1	BWI17_06255	BWI17_06295	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APV49317.1	APV49325.1	BWI17_06255	BWI17_06300	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APV49317.1	APV49326.1	BWI17_06255	BWI17_06305	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APV49317.1	APV49328.1	BWI17_06255	BWI17_06315	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APV49317.1	APV49330.1	BWI17_06255	BWI17_06325	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.925
APV49317.1	APV52324.1	BWI17_06255	BWI17_06285	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958

page 1 of 6

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About