STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APV50439.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (162 aa)    
Predicted Functional Partners:
APV50435.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.802
APV50440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
APV49631.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.741
APV49728.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
 
 0.741
APV50441.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
APV52366.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.509
APV50438.1
5-dehydro-4-deoxyglucarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
     
 0.499
APV50437.1
Glucarate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
APV50442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
APV50443.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
Your Current Organism:
Betaproteobacteria bacterium GR1643
NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.