STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APV51646.1HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)    
Predicted Functional Partners:
APV51647.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
APV51645.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
APV51644.1
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
APV51643.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
APV51648.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.420
APV51636.1
Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
Your Current Organism:
Betaproteobacteria bacterium GR1643
NCBI taxonomy Id: 1904640
Other names: B. bacterium GR16-43, Betaproteobacteria bacterium GR16-43, Nnibrrimonas geomnyongensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.