Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
kdgK2-keto-3-deoxygluconate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (340 aa)    
Predicted Functional Partners:
eda
KDPG and KHG aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.996
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.945
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
    
 0.915
hrmI
Hexuronic acid isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.902
rpe
D-ribulose-5-phosphate 3-epimerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.852
rspA
Starvation sensing protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
  0.837
dgoA-2
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.779
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.733
XCC3240
D-galactarate dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.613
hisA
Phosphoribosylformimino-5-aminoimidazole carboxam; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.585
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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