STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0122Pectate lyase E; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (347 aa)    
Predicted Functional Partners:
XCC0121
Pectin methylesterase-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.994
iroN-2
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.864
XCC0142
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.857
XCC0154
Rhamnogalacturonan acetylesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.694
xylB-2
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.672
aguA
Alpha-glucuronidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 67 family.
  
   
 0.653
XCC2265
Pectinesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.649
XCC4103
Sialic acid-specific 9-O-acetylesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family.
  
     0.627
xylB
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.618
XCC0149
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.608
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.