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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctPC4-dicarboxylate transport system; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (332 aa)    
Predicted Functional Partners:
dctQ
C4-dicarboxylate membrane transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.960
ygiK
C4-dicarboxylate transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.947
mhpD
2-keto-4-pentenoate hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.839
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.644
hrmI
Hexuronic acid isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.568
kdgK
2-keto-3-deoxygluconate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.560
XCC3240
D-galactarate dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.540
xynB
Xylanase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.455
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.412
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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