STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0149Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family. (526 aa)    
Predicted Functional Partners:
galA
Arabinogalactan endo-1,4-beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.687
XCC1191
alpha-L-arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.652
aguA
Alpha-glucuronidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.646
XCC0142
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.642
mhpD
2-keto-4-pentenoate hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.637
XCC2394
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.622
xylS
Alpha-xylosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.617
estA1
Carboxylesterase type B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the type-B carboxylesterase/lipase family.
 
     0.612
XCC0122
Pectate lyase E; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.608
xsa
Xylosidase/arabinosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
  
     0.602
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.