Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amtBAmmonium transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (491 aa)    
Predicted Functional Partners:
glnB
Nitrogen regulatory protein P-II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the P(II) protein family.
 
 0.999
glnB-2
Nitrogen regulatory protein P-II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the P(II) protein family.
 
 0.991
ntrB
Two-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.907
gltB
Glutamate synthase, alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.873
glnD
protein-PII uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.
 
   
 0.846
yadH
ABC-2 type transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.843
nasA
Nitrate transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.833
glnA
Glutamine synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.788
nasE
Nitrite assimilation small subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.725
glnA-3
Glutamine synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glutamine synthetase family.
  
  
 0.631
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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