Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC0214Methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; type III DNA modification enzyme. (543 aa)    
Predicted Functional Partners:
XCC0215
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.959
XCC0213
Conserved hypothetical protein; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
 
     0.845
dhaA
Haloalkane dehalogenase; Involved in olefin biosynthesis. Catalyzes the elimination of carbon dioxide from beta-lactones to form the final olefin product. Belongs to the AB hydrolase superfamily.
       0.779
XCC0524
Helicase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.722
XCC1067
Type III restriction-modification enzyme, helicase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.704
fabH
3-oxoacyl-[ACP] synthase III; Involved in olefin biosynthesis. Catalyzes a non- decarboxylative head-to-head Claisen condensation of two acyl-CoA molecules, generating an (R)-2-alkyl-3-oxoalkanoate. Is active with fatty acyl-CoA substrates that ranged from C(8) to C(16) in length, and is the most active with palmitoyl-CoA and myristoyl-CoA. Belongs to the thiolase-like superfamily. OleA family.
       0.566
gII
Replication initiation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.447
gII-2
Replication initiation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.447
XCC0525
ATP-dependent DNA helicase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.424
XCC2965
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.407
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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