Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XCC1428 | ykgJ | XCC1428 | XCC0217 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.413 |
XCC3547 | ykgJ | XCC3547 | XCC0217 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.460 |
flgD | ykgJ | XCC1950 | XCC0217 | Flagellar protein; Required for flagellar hook formation. May act as a scaffolding protein. | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.488 |
rdgC | ykgJ | XCC4098 | XCC0217 | Conserved hypothetical protein; May be involved in recombination; Belongs to the RdgC family. | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.411 |
ykgJ | XCC1428 | XCC0217 | XCC1428 | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.413 |
ykgJ | XCC3547 | XCC0217 | XCC3547 | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | 0.460 |
ykgJ | flgD | XCC0217 | XCC1950 | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Flagellar protein; Required for flagellar hook formation. May act as a scaffolding protein. | 0.488 |
ykgJ | rdgC | XCC0217 | XCC4098 | Ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. | Conserved hypothetical protein; May be involved in recombination; Belongs to the RdgC family. | 0.411 |