Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC0220Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (52 aa)    
Predicted Functional Partners:
XCC3437
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.937
XCC3924
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0337 (CsbD) family.
 
    0.898
XCC1045
Bacterioferritin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.659
XCC0070
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0337 (CsbD) family.
  
    0.647
cdh
NAD(P)H steroid dehydrogenase; Involved in olefin biosynthesis. Catalyzes the reversible stereospecific NADPH- dependent reduction of 2-alkyl-3-oxoalkanoic acids to 2-alkyl-3- hydroxyalkanoic acids (By similarity); Belongs to the 3-beta-HSD family.
  
    0.600
XCC4094
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.542
XCC3296
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.444
XCC3300
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.444
XCC3308
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.444
XCC3623
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.444
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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