STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanAVanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (350 aa)    
Predicted Functional Partners:
vanB
Vanillate O-demethylase oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.987
pobB
Phenoxybenzoate dioxygenase beta subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.917
glpR
Glycerol-3-phosphate regulon repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.736
pcaH-2
Protocatechuate 3,4-dioxygenase beta chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.638
XCC0298
Transcriptional regulator lysR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
 
     0.631
ligA
Protocatechuate degradation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.617
XCC1263
enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.596
XCC1833
enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.596
XCC0281
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.594
crt
3-hydroxybutyryl-CoA dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  
 0.593
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.