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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobBPhenoxybenzoate dioxygenase beta subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (327 aa)    
Predicted Functional Partners:
vanA-2
Vanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.978
bioI
Cytochrome P450 hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the cytochrome P450 family.
 0.925
vanA
Vanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.917
XCC1839
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.900
glpR
Glycerol-3-phosphate regulon repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.846
fadH
2,4-dienoyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.825
XCC0357
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.796
cysI
NADPH-sulfite reductase iron-sulfur protein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 
 0.772
XCC2412
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.769
XCC0372
Hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.760
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.