Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocatechuate 3,4-dioxygenase beta chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (245 aa)    
Predicted Functional Partners:
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.989
pobA
P-hydroxybenzoate hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.982
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 
0.982
pcaC
4-Carboxymuconolactone decarboxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.887
catD
B-ketoadipate enol-lactone hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.856
gctA
Glutaconate CoA transferase subunit A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.807
gctB
Glutaconate CoA transferase subunit B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.790
pcaR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.680
pcaF
Beta-ketoadipyl CoA thiolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.602
pobB
Phenoxybenzoate dioxygenase beta subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.601
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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