Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaCPhaC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (125 aa)    
Predicted Functional Partners:
phaD
PhaD protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.999
ndhF
NADH dehydrogenase subunit 5; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.999
phaF
PhaF protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.998
phaE
PhaE protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.998
XCC0441
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.997
nuoL
NADH-ubiquinone oxidoreductase NQO12 subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.883
phaZ
PHB depolymerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.799
gltB
Glutamate synthase, alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.764
phbB
acetoacetyl-CoA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.758
phbB-2
acetoacetyl-coA reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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