Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC0464Anticodon nuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (366 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
     0.950
XCC0463
Putative restriction modification system specificity subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.949
XCC0466
Type I site-specific deoxyribonuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.947
XCC0465
DNA-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.873
hsdM
Type I restriction enzyme M protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.581
XCC0461
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.497
trpE
Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]
       0.479
XCC0460
Threonine aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.479
trpG
Anthranilate synthase component II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.479
XCC4142
XmnI methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.434
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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