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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0465DNA-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (336 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
    0.943
XCC0466
Type I site-specific deoxyribonuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.934
XCC0463
Putative restriction modification system specificity subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.929
XCC0464
Anticodon nuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.868
XCC2904
Type I restriction enzyme (specificity chain) homolog; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.685
XCC2905
HsdR protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
    0.677
hsdM
Type I restriction enzyme M protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.671
XCC4142
XmnI methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.646
XCC2901
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
    0.637
XCC2102
YeeC-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.553
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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