STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0507Ice nucleation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1333 aa)    
Predicted Functional Partners:
XCC0866
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.568
vipA
Polysaccharide biosynthetic protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
      
 0.544
ndvB
Cyclic beta 1-2 glucan synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.506
ndvB-2
NdvB protein; Catalyzes the reversible phosphorolysis of cellobionic acid (4-O-beta-D-glucopyranosyl-D-gluconate), a probable step in cellulose degradation. May be part of a metabolic pathway where cellobionic acid is converted into alpha-D-glucose 1-phosphate and D-gluconic acid to enter glycolysis and the pentose phosphate pathway, respectively. Produces 4-O-beta-D-glucopyranosyl-D-glucuronate from alpha-D-glucose 1-phosphate and D-glucuronate with low activity in the synthetic direction.
      
 0.489
engXCA
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.461
XCC4186
Leucin rich protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.457
XCC3429
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.453
ampR-2
B-lactamase regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
   
  
 0.449
ampR
Transcriptional activator ampR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
   
  
 0.448
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.