Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xanBPhosphomannose isomerase/GDP-mannose pyrophosphorylase; Involved in xanthan production. (467 aa)    
Predicted Functional Partners:
xanA
Phosphoglucomutase; Involved in xanthan production.
 
 0.998
gumD
GumD protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.986
gmd
GDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
 0.982
algC
Phosphomannomutase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.976
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis; Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 
 0.965
ugd
UDP-glucose dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.963
pgi
Glucose-6-phosphate isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.949
galU
UTP-glucose-1-phosphate uridylyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.933
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.926
cbbFC
Fructose-1,6-bisphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  0.925
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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