Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
XCC0758Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (431 aa)    
Predicted Functional Partners:
XCC3954
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
 
 0.711
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.664
XCC0428
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
   0.617
XCC0757
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.606
XCC0756
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.589
XCC3318
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
 
 0.572
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.553
XCC3461
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.541
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
       0.523
XCC0755
Transcriptional regulator tetR/acrR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.523
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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