Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC0767Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (81 aa)    
Predicted Functional Partners:
phuR
Outer membrane hemin receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.855
piuB
Iron-uptake factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.651
fecA-5
Citrate-dependent iron transporter; Outer membrane receptor; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.642
XCC0481
Bacterioferritin-associated ferredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.598
feoA
Ferrous iron transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.487
fecI
RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.487
XCC0769
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.479
fecR
Transmembrane sensor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.462
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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