STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrtBPermease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (293 aa)    
Predicted Functional Partners:
nrtCD
ABC transporter ATP-binding component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
XCC0774
ABC transporter substrate binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
sflA
NADH-dependent FMN reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.937
XCC3071
ABC transporter ATP-binding subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.931
nasF
Nitrate transport ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.917
tauD
Taurine dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.840
nodQ
ATP sulfurylase/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.622
ynhE
ABC transporter permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.545
ftsX
Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
      
 0.544
XCC0771
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.543
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.