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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanRTranscriptional regulator gntR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (224 aa)    
Predicted Functional Partners:
vanB
Vanillate O-demethylase oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.827
hutC
Histidine utilization repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.800
hutI
Imidazolonepropionase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
      
 0.780
pcaQ
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
 
  
 0.693
pcaH-2
Protocatechuate 3,4-dioxygenase beta chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.629
hutG
Formylglutamate amidohydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.618
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
      
 0.591
ligA
Protocatechuate degradation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.588
XCC3446
Bifunctional NMN adenylyltransferase/nudix hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.578
pcaR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.531
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.