Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vanRTranscriptional regulator gntR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (224 aa)    
Predicted Functional Partners:
vanA-2
Vanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.786
vanB
Vanillate O-demethylase oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.774
hutC
Histidine utilization repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
vanA
Vanillate O-demethylase oxygenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.725
hutI
Imidazolonepropionase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
      
 0.723
pcaQ
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
 
  
 0.646
hutG
Formylglutamate amidohydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.642
pcaH-2
Protocatechuate 3,4-dioxygenase beta chain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.628
XCC3446
Bifunctional NMN adenylyltransferase/nudix hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.604
ligA
Protocatechuate degradation protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.588
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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