Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XCC0845Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark. (162 aa)    
Predicted Functional Partners:
XCC0847
ECF sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.937
XCC0846
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
    0.934
XCC2920
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.741
XCC3339
Membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.721
XCC3848
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.672
XCC1583
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.639
XCC0181
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.634
xpsM
General secretion pathway protein M; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.630
XCC0023
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.627
XCC1410
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.626
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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