Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acyPAcylphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (88 aa)    
Predicted Functional Partners:
acs
Acetyl coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.916
poxB
Pyruvate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the TPP enzyme family.
     
 0.906
gatAX
Glu-tRNAGln amidotransferase A subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
  0.906
aldA
Chloroacetaldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
     
 0.901
xylC
Benzaldehyde dehydrogenase II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
     
 0.901
badH
Aldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
     
 0.901
XCC3588
CoA tranferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
rbn
Ribonuclease BN; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.845
yneN
Thioredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.833
fldA
FldA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.800
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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