Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gatAXGlu-tRNAGln amidotransferase A subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (505 aa)    
Predicted Functional Partners:
acyP
Acylphosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
  0.906
xylC
Benzaldehyde dehydrogenase II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
    
  0.901
badH
Aldehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
    
  0.901
gctA
Glutaconate CoA transferase subunit A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
gctB
Glutaconate CoA transferase subunit B; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
XCC0436
4-hydroxyphenylpyruvate dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
  0.814
fldA
FldA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.800
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
 
 0.672
asnS
asparaginyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.634
pyrB
Aspartate carbamoyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.606
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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