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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgaBeta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family. (926 aa)    
Predicted Functional Partners:
bga-2
Beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.970
srfJ
Glycosyl hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.935
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.934
XCC4116
Beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.920
XCC2437
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
  
 0.912
galA
Arabinogalactan endo-1,4-beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.907
dgd
D-galactose 1-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.900
glk
Glucose kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial glucokinase family.
     
 0.900
glk-2
Glucose kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial glucokinase family.
     
 0.900
glk-3
Glucose kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial glucokinase family.
     
 0.900
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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