Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
acvBVirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (457 aa)    
Predicted Functional Partners:
XCC1323
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.879
XCC1321
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.572
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.571
XCC1319
Conserved hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.552
cirA-4
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.454
pru
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.447
XCC3074
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.447
xcsH
Type II secretion system protein H; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.440
XCC3871
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.422
bcsC
Cellulose synthase subunit C; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.420
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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