STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fasDOuter membrane usher protein FasD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (811 aa)    
Predicted Functional Partners:
ecpD
Pili assembly chaperone; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
XCC1376
Pili assembly chaperone; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.998
XCC1378
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.996
pru
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.996
mls
Malate synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.757
xpsH
General secretion pathway protein H; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
      
 0.641
virB2
VirB2 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.607
XCC2475
VirB3 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.596
aspH
Aspartyl/asparaginyl beta-hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.594
XCC1377
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.585
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.